cufflinks software package provides Transcript assembly, differential expression and regulation for RNA-Seq, you can install in your Debian 9 (Stretch) by running the commands given below on the terminal,
$ sudo apt-get update $ sudo apt-get install cufflinks
cufflinks is installed in your system.
Make ensure the cufflinks package were installed using the commands given below,
$ sudo dpkg-query -l | grep cufflinks *
You will get with cufflinks package name, version, architecture and description in a table
| Distro | Debian 9 stretch |
| Section | Science |
| Package | cufflinks |
| Version | 2.2.1-3 |
| Description | Transcript assembly, differential expression and regulation for RNA-Seq |
| Sub Section | Science |
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